Practice Questions

The amino acid sequence of a protein is ultimately determined by the

A. Protein's carbohydrate chains
B. mRNA cap
C. DNA nucleotide sequence
D. Disulfide bonds

The genetic code in DNA determines the amino acid sequence through transcription and translation.

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α-Helices are destabilized by consecutive residues of

A. Alanine and Glycine
B. Valine and Isoleucine
C. Serine and Cysteine
D. Aspartate and Glutamate

Branched β-carbon side chains create steric hindrance in α-helices.

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Hemoglobin exhibits a sigmoidal oxygen-binding curve because of

A. Presence of heme
B. High molecular weight
C. Cooperative binding due to quaternary structure
D. Ferric iron

Binding of oxygen to one subunit increases affinity of the remaining subunits.

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Silk fibroin owes its strength and flexibility mainly to repetitive sequences rich in

A. Gly-Ser-Gly-Ala-Gly-Ala
B. Pro-Hyp-Gly
C. Ala-Lys-Thr-Arg
D. Glu-Asp-Val-Phe

These repetitive sequences allow close packing of antiparallel β-sheets.

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The Ramachandran plot describes protein backbone geometry using the angles

A. ω and ψ
B. φ and ψ
C. φ and ω
D. χ and ψ

The φ (phi) and ψ (psi) angles define backbone conformation in proteins.

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Insulin is synthesized as a precursor. The connecting segment removed during maturation is called the

A. Signal peptide
B. C-peptide
C. Leader peptide
D. Heme group

The C-peptide connects the A and B chains in proinsulin and is removed to form mature insulin.

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The peptide bond is unusually planar because of resonance. The atoms lying in the peptide plane are the

A. α-carbon, amino group, and R-group
B. Carbonyl carbon, carbonyl oxygen, amide nitrogen, amide hydrogen, and the two adjacent α-carbons
C. Carbonyl carbon and amide nitrogen only
D. Entire side chains of both amino acids

Resonance restricts rotation around the peptide bond, making these six atoms coplanar.

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The levels of protein structure are hierarchical. A structure composed of a single polypeptide chain with two independently folding domains is best described as having

A. Primary structure only
B. Secondary structure only
C. Tertiary structure with domains
D. Quaternary structure

Domains are independently folded regions within a single polypeptide and are part of tertiary structure.

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In sickle cell anemia, a single amino acid substitution in the β-chain of hemoglobin replaces a hydrophilic glutamate with a hydrophobic valine at position six. This change directly affects the protein’s structure by

A. Disrupting a critical disulfide bond in the quaternary structure
B. Introducing a sticky hydrophobic patch on the protein surface that causes polymerization of deoxygenated hemoglobin
C. Breaking the iron-porphyrin coordination bond in the heme group
D. Causing the complete dissociation of the α and β subunits

The Val-6 substitution creates a hydrophobic patch on deoxyhemoglobin, leading to polymerization and sickling of red blood cells.

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Disulfide bonds are most commonly formed in the

A. Cytosol
B. Endoplasmic reticulum
C. Nucleus
D. Mitochondrial matrix

The oxidizing environment of the endoplasmic reticulum promotes the formation of disulfide bonds in secreted and membrane proteins.

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