Practice Questions

100. An in vitro transcription reaction is carried out using a modified nucleotide mixture where the 2′ hydroxyl group of all ribose sugars is replaced by a fluorine atom (2′-F). The resulting polynucleotide product will exhibit

A. An absolute inability to form Watson-Crick base pairs with DNA
B. Complete resistance to ribonuclease-mediated alkaline hydrolysis
C. Spontaneous conversion into a triple-stranded helical conformation
D. A total dependency on Rho protein factors for transcription initiation

Replacing the 2'-OH group removes the nucleophile required for autophilic attack, making the synthetic RNA highly resistant to ribonuclease degradation.

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Jul 3, 2026

99. During the process of RNA editing observed in certain eukaryotic transcripts, specific cytidine deaminase enzymes convert targeted cytosine bases into uracil. If this conversion occurs inside a coding exon, it can alter translation by

A. Changing an internal stop codon into an amino acid codon
B. Creating a premature stop codon that truncates the protein
C. Altering the 3' polyadenylation signal site configuration
D. Inhibiting the attachment of the 7-methylguanosine cap element

Converting a CAA codon (coding for glutamine) into a UAA codon introduces a premature stop signal, producing a shorter, tissue-specific protein.

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98. The architectural arrangement of a eukaryotic gene includes an upstream promoter element. If a chemical agent induces hypermethylation specifically at the cytosine residues of this promoter, the immediate cellular effect is the

A. Generation of truncated, shorter mRNA molecules
B. Silencing of the gene via the inhibition of RNA Polymerase II recruitment
C. Acceleration of alternative splicing events in the cytoplasm
D. Structural deformation of the 28S ribosomal RNA catalytic center

Promoter hypermethylation creates a structural barrier that blocks the binding of transcription factors and RNA polymerase, shutting down transcription.

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97. A patient presenting with severe microcytic anemia is diagnosed with a form of beta-thalassemia. Molecular sequencing reveals a single nucleotide substitution within an intron of the beta-globin gene that generates a novel, functional 3′ splice site. The consequence of this mutation on the resulting mRNA is the

A. Complete omission of the upstream coding exon
B. Retention of a portion of the intron as an aberrant exon sequence
C. Spontaneous degradation of the entire primary transcript within the nucleolus
D. Shift in the reading frame due to failure of poly-A tail attachment

The creation of a cryptic splice site inside an intron leads the spliceosome to misidentify the intron boundaries, incorporating junk sequence into the mature mRNA.

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96. The replication of the ends of linear eukaryotic chromosomes requires a specialized ribonucleoprotein complex called telomerase. The functional role of the RNA component within telomerase is to

A. Act as an enzymatic catalyst to link deoxyribonucleotides
B. Serve as an internal template for synthesizing telomeric DNA repeats
C. Protect the chromosome ends from being recognized as double-strand breaks
D. Recruit the large ribosomal subunit to the nuclear matrix scaffold

Telomerase is a reverse transcriptase that carries its own internal RNA molecule to serve as a structural template for lengthening chromosome ends.

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95. A genetic sequence undergoes a mutation that disrupts the conserved branch-point sequence located within an intron of a pre-mRNA molecule. This molecular defect would directly inhibit the

A. Addition of the 7-methylguanosine cap structure
B. Formation of the lariat intermediate during spliceosome-mediated splicing
C. Binding of the transcript to the 16S subunit of the ribosome
D. Export of the mature transcript through the nuclear pore complex

The branch-point sequence contains an adenine residue whose 2'-OH attacks the 5' splice site, a critical step for lariat formation during splicing.

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Puromycin structurally mimics an aminoacyl-tRNA, entering the A site and forming a premature peptide link that causes the peptide chain to detach.

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93. During the process of transcription elongation, the temporary RNA-DNA hybrid helix within the transcription bubble adopts a structural geometry that is

A. Distinctly B-form, matching the native double-stranded DNA template
B. Specifically A-form, induced by the structural configuration of the ribose sugar
C. Completely Z-form, characterized by a left-handed helical twist
D. Completely linear, preventing any base-stacking interactions

The 2'-OH group on the ribose ring structurally prevents the RNA-DNA hybrid from matching the B-form geometry, forcing it into an A-form configuration.

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92. The selective inhibition of the enzyme poly-A polymerase in a eukaryotic cell line would lead to the accumulation of cytoplasmic transcripts that are

A. Structurally normal but restricted to the nucleolus
B. Highly unstable and rapidly degraded by exonucleases
C. Incapable of undergoing alternative splicing mechanisms
D. Selectively translated at abnormally accelerated rates

Without a protective 3' poly-A tail, newly exported cytoplasmic mRNA molecules are quickly targeted and broken down by cellular exonucleases.

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91. An analysis of a eukaryotic gene reveals that it produces a single pre-mRNA transcript, but three distinct tissue-specific proteins are detected. This structural variation is most likely achieved by

A. Variable polyadenylation at the 5' terminus
B. Post-transcriptional alternative splicing of exons
C. Intramolecular rearrangement of the DNA promoter elements
D. Deamination of cytosine bases within the ribosomal RNA subunits

Alternative splicing allows exons to be skipped or combined in different ways, creating diverse protein products from one primary transcript.

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